Publications

2021

1. T. Narita, S. Ito, Y. Higashijima, W. K. Chu, K. Neumann, J. Walter, S. Satpathy, T. Liebner, W. B. Hamilton, E. Maskey, G. Prus, M. Shibata, V. Iesmantavicius, J. M. Brickman, K. Anastassiadis, H. Koseki, C. Choudhary.
   Enhancers are activated by p300/CBP activity-dependent PIC assembly, RNAPII recruitment, and pause release.
   Molecular Cell vol. 81, p. 1–17 (2021).

2020

1. M. Borries, Y. F. Barooji, S. Yennek, A. Grapin-Botton, K. Berg- Sørensen, L. B. Oddershede.
   Quantification of Visco-Elastic Properties of a Matrigel for Organoid Development as a Function of Polymer Concentration.
   Front. Phys., vol. 8, Article 579168 (2020).

2. C. D. Florentsen, G. S. Moreno-Pescador, A. Kjær, L. B. Oddershede and P. M. Bendix.
   Plasmonic Material Engineering for Targeted Therapeutics.
   Advanced Optical Materials, vol. 8, Issue 17 (2020).

3. A. Lewis, R. Keshara, Y. H. Kim and A. Grapin-Botton.
   Self-organization of organoids from endoderm-derived cells.
   Journal of Molecular Medicine, vol. 99, p. 449–462 (2020).

4. B. F. Nielsen, S. B. Nissen, K. Sneppen, J. Mathiesen, A. Trusina.
   Model to Link Cell Shape and Polarity with Organogenesis.
   iScience, vol. 23, Issue 2, Article 100830 (2020).

5. M. Niora, D. Pedersbæk, R. Münter, M. F. de Val Weywadt, Y. F. Barooji, T. L. Andresen, J. B. Simonsen and L. Jauffred.
   Head-to-Head Comparison of the Penetration Efficiency of Lipid-Based Nanoparticles into Tumor Spheroids.
   ACS Omega, vol. 5, Issue 33, p. 21162-21171 (2020).

6. P. Purohit, A. Samadi, P. M. Bendix, J. J. Laserna and L. B. Oddershede.
   Optical trapping reveals differences in dielectric and optical properties of copper nanoparticles compared to their oxides and ferrites.
   Scientific Reports, vol. 10, Article 1198 (2020).

2019

1. Madeleine Linneberg-Agerholm, Yan Fung Wong, Jose Alejandro Romero Herrera, Rita S Monteiro, Kathryn GV Anderson, Joshua M Brickman.
   Naïve human pluripotent stem cells respond to Wnt, Nodal and LIF signalling to produce expandable naïve extra-embryonic endoderm.
   Development, vol. 146, Issue 24 (2019).
   
   
2. Mathias L Heltberg, Sheng-hong Chen, Alba Jiménez, Ashwini Jambhekar, Mogens H Jensen, Galit Lahav.

   Inferring Leading Interactions in the p53/Mdm2/Mdmx Circuit through Live-Cell Imaging and Modeling.
   Cell Systems, vol. 9, Issue 6, p. 548-558. e5 (2019).

3. A. Igbaria, P.I. Merksamer, A. Trusina, F. Tilahun, J.R. Johnson, O. Brandman, N.J. Krogan, J.S. Weissman, F.R. Papa.
   Chaperone-mediated reflux of secretory proteins to the cytosol during endoplasmic reticulum stress. 
   Proceedings of the National Academy of Sciences, vol. 116, Issue 23, 11291-11298 (2019).

4. Sara Pozzi, Sarah Bowling, John Apps, Joshua M Brickman, Tristan A Rodriguez, Juan Pedro Martinez-Barbera.
   Genetic Deletion of Hesx1 Promotes Exit from the Pluripotent State and Impairs Developmental Diapause.
   Stem cell reports, vol. 13, Issue 6, p. 970-979 (2019).

5. N.S. de Groot, M.T. Burgas, C.N.J. Ravarani, A. Trusina, S. Ventura, M.M. Babu.
   The fitness cost and benefit of phase‐separated protein deposits. 
   Molecular systems biology, vol. 15, Issue 4 (2019).

6. William B Hamilton, Yaron Mosesson, Rita S Monteiro, Kristina B Emdal, Teresa E Knudsen, Chiara Francavilla, Naama Barkai, Jesper V Olsen, Joshua M Brickman.
   Dynamic lineage priming is driven via direct enhancer regulation by ERK.
   Nature, vol. 575, Issue 7782, p. 355-360 (2019).

7. Julius B Kirkegaard, Bjarke F Nielsen, Ala Trusina, Kim Sneppen.
   Self-assembly, buckling and density-invariant growth of three-dimensional vascular networks.
   Journal of the Royal Society Interface, vol. 16, Issue 159, p. 20190517 (2019).

8.  Ilcim Thestrup, Sara Caviglia, Jordi Cayuso, Ronja L. S. Heyne, Racha Ahmad, Wolfgang Hofmeister, Letizia Satriano, David G. Wilkinson, Jesper B. Andersen & Elke A. Ober.
   A morphogenetic EphB/EphrinB code controls hepatopancreatic duct formation.
   Nature Communications, vol. 10, Article number: 5220 (2019).

9. Mathias L Heltberg, Mogens H Jensen.
   Locked body clocks.
   Nature Physics, vol. 15, Issue 10, p. 989-990 (2019).

10. Adam F Laing, Venkat Tirumala, Evan Hegarty, Sudip Mondal, Peisen Zhao, William B Hamilton, Joshua M Brickman, Adela Ben-Yakar.
    An automated microfluidic device for time-lapse imaging of mouse embryonic stem cells.
    Biomicrofluidics, vol. 13, Issue 5 (2019).

11. Jonas S Juul, Mogens H Jensen, Sandeep Krishna.
    Constraints on somite formation in developing embryos.
    Journal of the Royal Society Interface, vol. 16, Issue 158, p. 20190451 (2019).

12. Lukas Huijbregts, Maja Borup Kjær Petersen, Claire Berthault, Mattias Hansson, Virginie Aiello, Latif Rachdi, Anne Grapin-Botton, Christian Honore, Raphael Scharfmann.
    Bromodomain and extra terminal protein inhibitors promote pancreatic endocrine cell fate.
    Diabetes, vol. 68, Issue 4, p. 761-773 (2019).

13. P. Lunnemann, M.H. Jensen, L. Jauffred.
    Gender bias in Nobel prizes. 
    Palgrave Communications, vol. 5, Issue 1, 46 (2019).

14. Y. He, K. Laugesen, D. Kamp, S.A. Sultan, L.B. Oddershede, L. Jauffred.
    Effects and side-effects of plasmonic photothermal therapy in brain tissue. 
    Cancer Nanotechnology, vol 10, article number 8 (2019).

15. G.M. Pescador, I. Qoqaj, V. Thusgaard Ruhoff, J.F. Iversen, J. Nylandsted, and P.M. Bendix.
    Effect of local thermoplasmonic heating on biological membranes. 
    SPIE Proceedings, vol. 11083, Optical Trapping and Optical Micromanipulation XVI; 110830M (2019).

16. G.M. Pescador, C.D. Florentsen, H. Østbye, S.L. Sønder, T.L. Boye, E.L. Veje, A.K. Sonne, S. Semsey, J. Nylandsted, R. Daniels, and P.M. Bendix.
    Curvature and Phase Induced Protein Sorting Quantified in Transfected Cell-Derived Giant Vesicles. 
    ACS NANO Publications, vol. 13, Issue 6, p. 6689-6701 (2019).

17. L. Jauffred, A. Samadi, H. Klingberg, P.M. Bendix, L. B. Oddershede.
    Plasmonic Heating of Nanostructures. 
    Chemical Reviews, vol. 19, Issue 13, p. 8087-8130 (2019).

18. M. Simón, K. Norregaard, J. T. Jørgensen, L. B. Oddershede, A. Kjaer.
    Fractionated photothermal therapy in a murine tumor model: comparison with single dose. 
    International Journal of Nanomedicine, vol. 14, p.5369—5379 (2019).

19. A. Samadi, L. Jauffred, H. Klingberg, P.M. Bendix, L. B. Oddershede.
    Optical control of strongly absorbing nanoparticles and their potential for photothermal treatment. 
    Proc. of Spie, vol. 10935, p. 109351A-1 (2019).

20. M.L. Heltberg, S. Krishna and M.H. Jensen.
    On Chaotic Dynamics in Transcription Factors and the Associated Effects in Differential Gene Regulation. 
    Nature Communications, vol.  10, p. 71 (2019).

2018

1. J.S. Juul, S. Krishna, and M.H. Jensen.
   Entrainment as a Means of Controlling Phase Waves in Populations of Coupled Oscillators. 
   Langmuir, DOI: 10.1021/acs.langmuir.8b01831 (2018).

2. S. Gauvrit, A. Villasenor, B. Strilic, P. Kitchen, M.M. Collins, R. Marin-Juez, S. Guenther, H.M. Maischein, N. Fukuda, M.A. Canham, J.M. Brickman, C.W. Bogue, P.S. Jayaraman, and D.Y.R. Stainier.
   HHEX is a transcriptional regulator of the VEGFC/FLT4/PROX1 signaling axis during vascular development. 
   Nature Communications 9, 2704, doi:10.1038/s41467-018-05039-1 (2018).

3. B.T. Weinert, T. Narita, S. Satpathy, B. Srinivasan, B.K. Hansen, C. Scholz, W.B. Hamilton, B.E. Zucconi, W.W. Wang, W.R. Liu, J.M. Brickman, E.A. Kesicki, A. Lai, K.D. Bromberg, P.A. Cole, and C. Choudhary.
   Time-Resolved Analysis Reveals Rapid Dynamics and Broad Scope of the CBP/p300 Acetylome. 
   Cell 174, 231-244.e212, doi:10.1016/j.cell.2018.04.033 (2018).

4. C.D. Florentsen, A-K. V.West, H.M.D. Danielsen, S. Semsey, P.M. Bendix, L. B. Oddershede.
   Quantification of Loading and Laser-Assisted Release of RNA from Single Gold Nanoparticles.. 
   Langmuir, vol. 34 (49), p. 14891–14898 (2018).

5. S. Boye, S. Ronhild, A. Trusina, K. Sneppen.
   Theory bridging cell polarities with development of robust complex morphologies.. 
   eLife, vol. 7, e38407, DOI: 10.7554/eLife.38407 (2018).

6. L. Wullkopf, A-K. V.West, N. Leijnse, T. R. Cox, C. D. Madsen, L. B. Oddershede, J. T. Erler.
   Cancer cell ability to mechanically adjust to extracellular matrix stiffness correlates with their invasive potential.. 
   Mol Biol Cell., vol. 29, p. 2378-2385 (2018).

7. A. Christensen, A.-K. V. West, L. Wullkopf, J. T. Erler, L. B. Oddershede and J. Mathiesen.
   Friction-limited cell motility in confluent monolayer tissue.. 
   Phys. Biol. vol. 15 p. 066004 (2018).

8. A. H. Montoto, R. Montes, A. Samadi, M. Gorbe, J. Terrés, R. Cao-Milán, E. Aznar, J. Ibañez, R. Masot, M. D. Marcos, M. Orzáez, F. Sancenón, L. B. Oddershede, and R. Martínez-Máñez.
   Gold Nanostars Coated with Mesoporous Silica Are Effective and Nontoxic Photothermal Agents Capable of Gate Keeping and Laser-Induced Drug Release.. 
   ACS Appl. Mater. Interfaces, vol. 10, p. 27644−27656 (2018).

9. J.T. Jørgensen, K. Norregaard, M.S. Martin, L.B. Oddershede, A. Kjaer.
   Non-invasive Early Response Monitoring of Nanoparticle-assisted Photothermal Cancer Therapy Using 18F-FDG, 18F-FLT, and 18F-FET PET/CT Imaging.. 
   Nanotheranostics vol. 2, p. 201-2010 (2018).

10. S.B. Dahl-Jensen,S. Yennek, L. Flasse, H. L. Larsen, D. Sever, G. Karremore, I. Novak, K. Sneppen and A. Grapin-Botton.
    Deconstructing the principles of ductal network formation in the pancreas.. 
    PLOS Biology, vol. 16, No. 7, e2002842, doi: 10.1371/journal.pbio.2002842 (2018).

11. C. Ramond, B.S. Beydag-Tasöz, A. Azad, M. van de Bunt, M.B.K. Petersen, N.L. Beer, N. Glaser, C. Berthault, A.L. Gloyn, M. Hansson, M.I. McCarthy, C. Honoré, A. Grapin-Botton, R. Scharfmann.
    Understanding human fetal pancreas development using subpopulation sorting, RNA sequencing and single-cell profiling.. 
    Development. 2018 Jul 24. pii: dev.165480. doi: 10.1242/dev.165480. [Epub ahead of print] PMID:30042179 (2018).

12. S. Caviglia and E. A. Ober .
    Non-conventional protrusions: the diversity of cell interactions at short and long distance.. 
    Current Opinion in Cell Biology, vol. 54, p. 106-113, doi: 10.1016/j.ceb.2018.05.013 (2018).

13. A. Samadi, H. Klingberg, L. Jauffred, A. Kjaer, P.M. Bendix, L.B. Oddershede.
    Platinum nanoparticles: a non-toxic, effective and thermally stable alternative plasmonic material for cancer therapy and bioengineering.. 
    Nanoscale, vol.10, p. 9097 (2018).

14. T. Stangner, T. Dahlberg, P. Svenmarker, J. Zakrisson, K. Wiklund, L.B. Oddershede, M. Andersson.
    Cooke-Triplet tweezers: more compact, robust, and efficient optical tweezers. 
    Optics Letters vol. 43, p. 1990-1993, doi: 10.1364/OL.43.001990 (2018).

15. A. Bahadori, G. Moreno-Pescador, L.B. Oddershede, P.M. Bendix.
    Remotely controlled fusion of selected vesicles and living cells: a key issue review.. 
    Reports on Progress in Physics, 81 p. 032602, doi: 10.1088/issn.0034-4885 (2018).

16. E. A. Ober & F. P. Lemaigre.
    Development of the liver: insights into organ and tissue morphogenesis. 
    Journal of Hepatology, doi: 10.1016/j.jhep.2018.01.005 (2018).

2017

1. A. Grapin-Botton & P. Serup. 
   Parsing the Pancreas. 
   The New England Journal of Medicine, 376(9), 886-888, doi: 10.1056/NEJMcibr1616217 (2017).

2. K. Norregaard, R. Metzler, C.M. Ritter, K. Berg-Sorensen, L.B. Oddershede.
   Manipulation and motion of organelles and single molecules in living cells.
   Chemical Reviews, 117 (5), pp 4342–4375, DOI: 10.1021/acs.chemrev.6b00638 (2017).

3. W.B. Hamilton, J.M. Brickman.
   Surveillance for secure differentiation.  
   I: Cell stem cell, Vol. 20, Nr. 1, 05.01.2017, s. 3-5, DOI: 10.1016/j.stem.2016.12.011 (2017).

4. K.G.V. Anderson, W.B. Hamilton, F.V. Roske, A. Azad, T.E. Knudsen, M.A. Canham, L.M. Forrester, J.M. Brickman.
   Insulin fine-tunes self-renewal pathways governing naive pluripotency and extra-embryonic endoderm.
   Nature Cell Biology, 19, DOI:10.1038/ncb3617 (2017).

5. K.R. Rosholm, N. Leijnse, A. Mantsiuo, V. Tkach, S.L. Pedersen, V.F. Wirth, L.B. Oddershede, K.J. Jensen, N.S. Hatzakis, P.M. Bendix, A. Callan-Jones, D. Stamou.
   Membrane curvature regulates ligand-specific membrane sorting of GPCRs in living cells.
   Nature Chemical Biology, DOI:10.1038/nchembio.2372 (2017).

6. H. List Larsen, L. Martín-Coll, A.V. Nielsen, C.V.E. Wright, A. Trusina, Y.H.Kim, A. Grapin-Botton.
   Stochastic priming and spatial cues orchestrate heterogeneous clonal contribution to mouse pancreas organogenesis.
   Nature Communications, 19, DOI:10.1038/s41467-017-00258-4 (2017).

7. L.A. Lonowski, A.R. Yoshiki Narimatsu, C.E. Delay, Z. Yang, F. Niola, K. Duda, E.A. Ober, H. Clausen, H.H. Wandall, S.H. Hansen, E.P. Bennett, M. Frödin.
   Genome editing using FACS enrichment of nuclease-expressing cells and indel detection by amplicon analysis.
   Nature Protocols, 12(3), 581-603, DOI:10.1038/nprot.2016.165 (2017).
   
   
8. S. Boye, M. Perera Pérez, J. Martin Gonzalez, S.M.C. Morgani; M.H. Jensen, K. Sneppen, J.M. Brickman; A. Trusina.
   Four simple rules that are sufficient to generate the mammalian blastocyst.
   I.PLOS Biology, Bind 15, Nr. 7, e2000737, s. 1-30 (2017).
   
   
9. L. Jauffred, R. Munk-Vejborg, K.S. Korolev, S. Brown, L.B. Oddershede.
   Chirality in microbial biofilms is mediated by close interactions between the cell surface and the substratum.
   The ISME Journal, Nature Publishing Group, 11, 1688–1701, DOI:10.1038/ismej.2017.19 (2017).
   
   
10. R. Rasmussen, M.H. Jensen, M. L. Heltberg.
    Chaotic Dynamics Mediate Brain State Transitions, Driven by Changes in Extracellular Ion Concentrations.
    Cell Systems, 5 (6), doi: 10.1016/j.cels.2017.11.011 (2017).
    
    
11. M. B. K. Petersen, A. Azad, C. Ingvorsen, K. Hess, M. Hansson, A. Grapin-Botton, C. Honore. 
    Single-Cell Gene Expression Analysis of a Human ESC Model of Pancreatic Endocrine Development Reveals Different Paths to b-Cell Differentiation. 
    Stem Cell Reports, 9(4), 1246-1261, doi:10.1016/j.stemcr.2017.08.009 (2017).
    
    
12. A. Samadi, P.M. Bendix, L.B. Oddershede.
    

    Optical manipulation of individual strongly absorbing platinmum nanoparticles.
    Nanoscale, Vol. 9, 18449. DOI:10.1039/c7nr07374g (2017).

13. S. Dahl-Jensen & A. Grapin-Botton. 
    The physics of organoids: a biophysical approach to understanding organogenesis. 
    Development, 144, 946-951, doi:10.1242/dev.143693 (2017).
     
14. A. Bahadori, L.B. Oddershede, P.M. Bendix.
    Hot-nanoparticle-mediated fusion of selected cells.
    Nano Research, vol. 10, p. 2034-2045, DOI:10.1007/s12274-016-1392-3 (2017).
    
    
15. H. L. Larsen & A. Grapin-Botton. 
    The molecular and morphogenetic basis of pancreas organogenesis. 
    Seminars in Cell & Developmental Biology, 66, 51-68, doi: 10.1016/j.semcdb.2017.01.005 (2017).
    
    
16. A.-K. V. West, L. Wullkopf, A. Christensen, N. Leijnse, J.M. Tarp, J. Mathiesen, J.T. Erler, L.B. Oddershede.
    Dynamics of cancerous tissue correlates with invasiveness.
    Scientific Reports, Nature Publishing Group, DOI: 10.1038/srep43800 (2017).
    
    
17. O. Schlesinger, Y. Chemla, M. Heltberg, E. Ozer, R. Marshall, V. Noireaux, M. H. Jensen, L. Alfonta.
    Tuning of Recombinant Protein Expression in Escherichia coli by Manipulating Transcription, Translation Initiation Rates, and Incorporation of Noncanonical Amino Acids.
    ACS Systhetic Biology, 6 (6), DOI: 10.1021/acssynbio.7b00019 (2017).
    
    
18. S. Wang, S. R. Miller, E.A. Ober, K.C. Sadler.
    Making it new again: Insight into liver development, regeneration, and disease from zebrafish research.
    Current topics in developmental Biology, 124, 161-195, DOI: 10.1016/bs.ctdb.2016.11.012 (2017).
    
    
19. T. Holst-Hansen, E.Abad, A. Muntasell, M. López-Botet, M.H. Jensen, A. Trusina, J. Garcia-Ojalvo.
    Impact of Zygosity on Bimodal Phenotype Distributions.
    Biophysical Journal, 113 (1), doi: 10.1016/j.bpj.2017.05.010 (2017).
    
    

20. J.M. Brickman & P. Serup.
    Properties of embryoid bodies.
    I: Developmental Biology, Vol. 6, Nr. 2, DOI: 10.1002/wdev.259 (2017).

21. Y. Chemla, M. Friedman, M. Heltberg, A. Bakhrat, E. Nagar, R. Schwarz, M. H. Jensen, L. Alfonta. Expanding the genetic code of a phtoautotrophic organism. Biochemistry, 56 (16), DOI:  10.1021/acs.biochem.7b00131 (2017).

22. R. Portero Migueles, L. Shaw, N.P. Rodrigues, G. May, K. Henseleit, K.G.V. Anderson, H. Goker, Hakan, C.M. Jones, M.F.T.R. de Bruijn, J.M. Brickman, T. Enver.
    Transcriptional Regulation of Hhex in Hematopoiesis and Hematopoietic Stem Cell Ontogeny.
    I: Developmental Biology, Bind 424, Nr. 2, s. 236-245 (2017).

23. K. Norregaard, J.T. Jørgensen, M. Simón, F. Melander, L.K. Kristensen, P.M. Bendix, T.L. Andresen, L.B. Oddershede, A. Kjaer.
    F-FDG PET/CT-based early treatment response evaluation of nanoparticle-assisted photothermal cancer therapy.
    PLoS One, Vol 12 (5), DOI:10.1371/journal.pone.0177997 (2017).

24. M. L. Heltberg, S. Kristhna, M.H. Jensen.
    Time Correlations in Mode Hopping of Coupled Oscillators.
    Journal of Statistical Physics, 167 (3-4), doi: 10.1007/s10955-017-1750-x (2017).

Published proceedings and book contributions:

• L.B. Oddershede, A. Bahadori, P.M. Bendix.
  Optical manipulation of hot nanoparticles can mediate selected cell fusion.
  SPIE Proceeding Vol 10252, Optical Manipulations Conference, DOI:10.1117/12.2270424 (2017).
• C.M. Ritter, J. Mas, L. Oddershede, K. Berg-Sorensen.
  Quantifying force and viscoelasticity inside living cells using an active-passive calibrated optical trap.
  Book Chapter: Optical Tweezers: Methods and Protocols, Methods in Molecular Biology, vol. 1486 p. 513-536, DOI 10.1007/978-1-4939-6421-5_20, Springer (2017).
• A. Bahadori, L.B. Oddershede, P.M. Bendix.
  Optically controlled and selective fusion of cells and vesicles using plasmonic nano-heaters.
  Book: Light Robotics - Structure-mediated Nanobiophotonics, Elsevier, ISBN: 9780702070969 (2017).

2016

1. J. Tranekjaer Joergensen, K. Norregaard, P. Tian, P.M. Bendix, A. Kjaer, L.B. Oddershede.
   Single Particle and PET-based platform for identifying optimal plasmonic nano-heaters for photothermal cancer therapy.
   Scientific Reports, vol. 6 p. 30076-(1-10) (2016).
 
2. Y.F. Barooji, A. Rorvig-Lund, S. Semsey, S.N.S. Reihani, P.M. Bendix.
   Dynamics of membrane nanotubes coated with I-BAR.
   Scientific Reports, vol. 6 p. 30054--(1-12) (2016).
 
3. A. Bahadori, A.R. Lund, S. Semsey, L.B. Oddershede, P.M. Bendix.
   Controlled cellular fusion using optically trapped plasmonic nano-heaters.
   Proceedings of SPIE, vol. 9922 p. 1-10 (2016).
 
4. C.M. Ritter, J.M. Brickman, L.B. Oddershede.
   Optical quantification of forces at play during stem cell differentiation.
   Proceedings of SPIE, vol. 9764 p. 97640J-(1-9) (2016).
    
5. S.B. Dahl-Jensen, M. Figueiredo-Larsen, A. Grapin-Botton & K. Sneppen.
   Short-range growth inhibitory signals from the epithelium can drive non-stereotypic branching in the pancreas,
   Phys. Biol. 13 016007, DOI: 10.1088/1478-3975/13/1/016007 (2016).
   
   
6. A. Bahadori, L.B. Oddershede, P.M. Bendix.
   Hot-nanoparticle-mediated fusion of selected cells.
   Nano Research.
   DOI: 10.1007/s12274-016-1392-3 (2016)
   
   
7. M.J.Obersriebnig, E.M.H.Pallesen, K.Sneppen, A. Trusina, G. Thon.
   Nucleation and spreading of a heterochromatic domain in fission yeast.
   Nature Communications, Vol. 7, 11518 (2016).
   Doi: 10.1038/ncomms11518
   
   
8. Raphaël B. Di Roberto, B. Chang, A. Trusina.
   Evolution of a G. protein-coupled receptor response by mutations in regulatory network interactions.
   Peisajovich, Sergio G. Nature Communications, Vol 7, 12344, 04.08.2016.
   Doi: 10.1038/ncomms12344. (2016)
   
   
9. R.S. Illingworth, J.J. Hölzenspies, F.V. Roske, W.A. Bickmore, J.M. Brickman.
   Polycomb enables primitive endoderm lineage priming in embryonic stem cells.
   Elife, October 10, 5. pii: e14926. (2016)
   DOI: 10.7554/eLife.14926
   
   
10. S. Vedel, H. Nunns, A. Košmrlj, S. Semsey, A. Trusina.
    Asymmetric Damage Segregation Consitutes an Emergent Population-Level Stress Response.
    Cell Systems. (13.07.2016).
    DOI: 10.1016/j.cels.2016.06.008
    
    
11. M.L. Heltberg, R. Kellogg, S. Krishna, S. Tay, M.H. Jensen.
    Noise-induced NP-kB Mode Hopping Enables Temporal Gene Multiplexing.
    Cell Systems, 532-539, (21.12. 2016)
    DOI: 10.1016/j.cels.2016.11.014
    
    
12. J.Martin Gonzalez, S.M. Morgani, R.A. Bone, K. Bonderup, S. Abelchian, C. Brakebusch, J.M. Brickman.
    Embryonic Stem Cell Culture Conditions Support Distinct States Associated with Different Developmental Stages and Potency.
    Stem Cell Reports, 7 (2): 177:91. (09.08.2016)
    DOI: 10.1016/j.stemcr.2016.07.009
    
    
13. C. Berclaz, A. Schmidt-Christensen, D. Szlag, J. Extermann, L.Hansen, A. Bouwens, M. Viliger, J. Goulley, F. Schuit, A. Grapin-Botton, T. Lasser, D. Holmberg.
    Longitudinal three-dimensional visualization of autoimmune diabetes by functional optical coherence imaging.
    Diabetologia, 59 (3): 550-9, (03.2016)
    DOI: 10.1007/s00125-015-3819-x
    
    
14. J. Tranekjaer Joergensen, K. Norregaard, P. Tian, P.M. Bendix, A. Kjaer, L.B. Oddershede.
    Single Particle and Pet-based platform for identifying optimal plasmonic nano-heaters forphotothermal cancer thearapy.
    Scientific Reports, Vol. 6 p. 30076-(1-10). (2016).
    DOI: 10.1038/srep30076
    
    
15. Anne Grapin-Botton
    Three-dimensional pancreas organogenesis models.
    Diabetes Obes Metab, Issue Supplement 1:33-40. Review. (18.09.2016)
    DOI: 10.1111/dom.12720
    
    
16. C.Berclaz, D. Szlag, D. Nguyen, J. Extermann, A. Bouwens, P.J. Marchand, J. Nilsson, A. Schmidt-Christensen, D. Holmberg, A. Grapin.Botton, T. Lasser.
    Label-free fast 3D coherent imaging reveals pancreatic islet micro-vascularization and dynamic blood flow.
    Biomed Opt Express. 7 (11): 4569-4580. (17.10.2016)
    DOI: 10.1364/BOE.7.004569
    
    
17. A. E. Moelgaard, I. Zettler, J.H. Dammeyer, S. Lehman, M.H.Jensen. J. Mathiesen.
    Measure of Node Similarity in Multilayer Networks.
    PloS One, e0146096, 14.06.2016.
    DOI: 10.1371/journal.pone.0157436
    
    
18. P. Tian, K. Lindorff-Larsen, W. Boomsma, M. H. Jensen, J. Mathiesen.
    A Montecarlo study of the early steps of functional amyloid formation.
    PloS One, e0146096. (08.01.2016).
    DOI: 10.1371/journal.pone.0146096
    
    
19. M. Rothová, J. J. Hölzenspies, A. Livigni, S.N. Villegas, J. M. Brickman.
    Differentiation of Mouse Embryonic Stem Cells into Ventral Foregut Precursors.
    Curr. Protoc. Stem. Cell Biol. , 3; 36: 1G. 3.1.-12. Review. PMID. (03.02.2016)
    DOI: 10.1002/9780470151808.sc01g03s36

Published proceedings and book contributions:

• A. Bahadori, A.R.Lund, S. Semsey, L.B. Oddershede, P.M. Bendix.
  Controlled cellular fusion using optically trapped plasmonic nano-heaters.
  Proceedings of SPIE, Vol. 9922 p. 1-10 (2016).
  DOI: 10.1117/12.2237848
• C.M. Ritter, J. M. Brickman, L. B. Oddershede.
  Optical quantification of forces at play during stem cell differentiation.
  Proceedings of SPIE, vol. 9764 p. 97640J-(1-9). (2016)
  DOI: 10. 1117/12.2213377

2015

1. A. Grapin-Botton, P.A. Seymour & G. Gradwohl.
   Pairing-up SOX to kick-start beta cell genesis.
   Diabetologia, Vol. 58, No. 5, 05.2015, p. 859-861,
   DOI: http://dx.doi.org/10.1007/s00125-015-3539-2 (2015)
    
2. A. Kosmrlj, P. Cordsen, A. Kyrsting, D.E. Otzen, L.B. Oddershede and M.H. Jensen.
   A monomer-trimer model supports intermittent glucagon fibril growth. 
   Scientific Reports 5, 9005 (2015) 
   DOI: 10.1038/srep09005
    
3. A. Rørvig-Lund, A. Bahadori, S. Semsey, P.M. Bendix, L.B. Oddershede.
   Vesicle Fusion Triggered by Optically Heated Gold Nanoparticles.
   Nano Letters, vol. 15 p. 4183-4188 (2015). 
   DOI: 10.1021/acs.nanolett.5b01366
    
4. A.F. Laing, S. Lowell & J. Brickman.
   Gro/TLE enables embryonic stem cell differentiation by repressing pluripotent gene expression
   Developmental Biology, Vol. 397, No. 1, 01.01.2015, p. 56-66.
   DOI: http://dx.doi.org/10.1016/j.ydbio.2014.10.007
    
5. C. Berclaz, C.  Pache, A. Bouwens, D. Szlag, A. Lopez, L. Joosten, S. Ekim, M. Brom, M. Gotthardt, A. Grapin-Botton & T. Lasser.
   Combined Optical Coherence and Fluorescence Microscopy to assess dynamics and specificity of pancreatic beta-cell tracers
   Scientific Reports, Vol. 5, 19.05.2015,
   DOI: http://dx.doi.org/10.1038/srep10385
    
6. C. Greggio, F. De Franceschi & A. Grapin-Botton.
   In Vitro-Produced Pancreas Organogenesis Models In Three Dimensions : Self-Organization From Few Stem Cells Or Progenitors.
   Stem Cells, Vol. 33, No. 1, 01.2015, p. 8-14.
   DOI: http://dx.doi.org/10.1002/stem.1828
    
7. E.A. Ober & A. Grappin-Botton.
   At new heights - endodermal lineages in development and disease. Development (Cambridge, England), Vol. 142, No. 11, 01.06.2015, p. 1912-1917, DOI: http://dx.doi.org/10.1242/dev.121095 
    
8. H. Klingberg, L.B. Oddershede, K. Loeschner, E.H. Larsen, S. Loft, P. Møller. Uptake of gold nanoparticles in primary human endothelial cells. Toxicology research, vol. 4 p.655-666 (2015) 
   DOI: 10.1039/c4tx00061g
    
9. H. Klingberg, S. Loft, L.B. Oddershede, P. Møller.
   Influence of flow, shear stress and adhesion molecule targeting on gold nanoparticle uptake in human endothelial cells.
   Nanoscale, vol. 7 p. 11409-11419 (2015),
   DOI: 10.1039/C5NR01467K.
    
10. J. Holzenspies G. Dela Cruz & J. Brickman.
    Resolving Heterogeneity: Fluorescence-Activated Cell Sorting of Dynamic Cell Populations from Feeder-Free Mouse Embryonic Stem Cell Culture, Methods in molecular biology (Clifton, N.J.), 2015.
    DOI: http://dx.doi.org/10.1007/7651_2015_254 
     
11. K.M. Bendtsen, M.H. Jensen; S. Krishna & S. Semsey.
    The role of mRNA and protein stability in the function of coupled positive and negative feedback systems in eukaryotic cells, Scientific Reports, Vol. 5, 13910, 14.09.2015.
    DOI: http://dx.doi.org/10.1038/srep13910
      
12. L. Jauffred, S. Mohammad-Reza Taheri, R. Schmitt, H. Linke, L.B. Oddershede. Optical Trapping of Gold Nanoparticles in Air.
    Nano Letters, vol. 15 p. 4713-4719 (2015), 
    DOI: 10.1021/acs.nanolett.5b01366, also featured at  Nanowerk.com  and on the Women in Nanoscience blog 
     
13. L.A. Lemaire, J. Goulley,Y.H. Kim, S. Carat, P. Jacquemin, J. Rougemont, D.B. Constam & A. Grapin-Botton.
    Bicaudal C1 promotes pancreatic NEUROG3+ endocrine progenitor differentiation and ductal morphogenesis.
    Development (Cambridge, England), Vol. 142, No. 5, 01.03.2015, p. 858-70.
    DOI: http://dx.doi.org/10.1242/dev.114611
     
14. L.B. Oddershede.
    Voices of chemical biology.
    Nature Chemical Biology, vol. 11 p.378-379, 446-447, 752-753 (2015).
    DOI: 10.1038/nchembio.1820
     
15. N. Leijnse, L.B. Oddershede, P.M. Bendix.
    An updated look at actin within filopodia. Cytoskeleton, vol.72 p.71-79 (2015).
    DOI: http://dx.doi.org/10.1080/19420889.2015.1022010,
     
16. N. Leijnse, L.B. Oddershede, P.M. Bendix.
    Dynamic buckling of actin within filopodia.
    Communicative and Integrative Biology, vol.8 p. e1022010-(1-3) (2015).
    DOI: 10.1080/19420889.2015.1022010,
     
17. N. Leijnse, L.B. Oddershede, P.M. Bendix.
    Helical buckling of actin inside filopodia generates traction. PNAS, vol. 112 p. 136-141 (2015),
    DOI:www.pnas.org/lookup/suppl/doi:10.1073/pnas.1411761112/-/DCSupplemental,
     
18. N. Mitarai, M.H. Jensen, S. Semsey.
    Coupled positive and negative feedbacks produce diverse gene expression patterns in colonies, mBio, Vol. 6, Nr. 2, e00059, 07.04.2015.
    DOI: http://dx.doi.org/10.1128/mBio.00059-15
     
19. P. Tian, W. Boomsma, Y. Wang, D.E. Otzen, M.H. Jensen and K. Lindorf-Larsen. Structure of a Functional Amyloid Protein Computed Using Sequence Variation, J. Am. Chem. Soc., 137, pp 22 - 25.
    DOI: 10.1021/ja5093634 (2015)
     
20. R.K. Schmitt, L. Jauffred, S. Mohammad-Reza Taheri, H. Linke, L.B. Oddershede. Optical trapping of gold aerosols. Proceedings of SPIE, vol. 9548 p.95480F-1 (2015)
    DOI:10.1117/12.2188444
     
21. T.C.T Michaels, P. Yde, J.C.W Willis, D. Otzen, C.M. Dobson, A.K. Buell, T.P.J. Knowles, The length distribution of frangible biofilaments, Journal of Chemical Physics, Vol. 143, Nr. 16, 28.10.2015,
    DOI: http://dx.doi.org/10.1063/1.4933230,
     
22. Y.A. Kim H. Larsen, P. Rué, L.A. Lemaire, J. Ferrer & A. Grapin-Botton.
    Cell cycle-dependent differentiation dynamics balances growth and endocrine differentiation in the pancreas.
    P L o S Biology, Vol. 13, No. 3, 03.2015, p. e1002111.
    DOI: http://dx.doi.org/10.1371/journal.pbio.1002111,
     
23. S.M. Morgani & J.M. Brickman (2015).
    LIF supports primitive endoderm expansion during pre-implantation development.
    Development 2015 142: 3488-3499.
    DOI: 10.1242/dev.125021
     
24. K. Koltowska, AK Lagendijk, C Pichol-Thievend, JC Fischer, M Francois, EA Ober, A.S. Yap, BM. Hogan. (2015)
    Vegfc Regulates Bipotential Precursor Division and Prox1 Expression to Promote Lymphatic Identity in Zebrafish”.  
    13(9):1828-41.
    DOI: 10.1016/j.celrep.2015.10.055